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CodeQL flagged 3 clear-text-logging-of-secrets alerts in install_requirements_file() (src/common/permission_utils.py:353,360,371). Pre-existing on main, unrelated to this PR's own diff, but now visible since the path-injection alerts that previously took priority in the annotation list are fixed. The underlying risk is real: pip can echo a private index URL's embedded basic-auth credentials (from a requirements.txt --index-url line or PIP_INDEX_URL) back verbatim in its own stderr/stdout on failure, and this function both logs that output directly and returns it to callers -- store_manager.py's _install_dependencies() logs result.stderr from this same function too. Added _redact_url_credentials(), applied immediately after each of the two subprocess.run() calls (mutating result.stderr/stdout in place) rather than patching each log call site individually. This closes the leak at the source: every downstream use -- the three flagged log lines, the "note" string embedded in the returned stdout, and store_manager.py's own logging of the returned result -- gets the redacted text for free. Verified the fixed-phrase "denied" check (`"a password is required" in result.stderr`) is unaffected, since URL syntax and those phrases don't overlap -- covered explicitly by test_does_not_touch_denied_check_phrases. Added test/test_permission_utils.py (6 tests) covering the redaction helper directly and both subprocess.run() call sites (the sudo-wrapper branch, which this repo's scripts/fix_perms/safe_pip_install.sh makes live, and the no-wrapper fallback branch). All pass.